PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000580841
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 342aa    MW: 38045.4 Da    PI: 6.2878
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000580841genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-145596346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     ++T+ E+el+v++++  G++ W +Ia+ ++ gRt++++k++w++
    MDP0000580841 55 SFTPHEEELIVRLHATIGSR-WPAIAQQLP-GRTDNDVKNYWNT 96
                     79******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.84E-191194IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-111155IPR009057Homeodomain-like
PROSITE profilePS500905.4361247IPR017877Myb-like domain
PROSITE profilePS5129420.65448102IPR017930Myb domain
SMARTSM007172.8E-1352100IPR001005SANT/Myb domain
CDDcd001672.15E-105598No hitNo description
PfamPF002491.3E-125596IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2256102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVRPACCDKL HVSKHGRSNW TSVPKKPVFT GITRCGKSSR LRWPNHLKPN LKHESFTPHE  60
EELIVRLHAT IGSRWPAIAQ QLPGRTDNDV KNYWNTKLKK KLSEMGIDPV THKPFSQVLX  120
DYGNIGGLPK VGMRIGIGSL NKDLKNAMLM EPAEPYLLTA QGFSNINSHL MPITMIPTKE  180
EPILDSFLGH NQPSSQPPDL LTQLQAIKLV TEASKSTEFQ SSAPNFYSHE GXLSSPSSTS  240
SSAAQEQATL QTFSWSDFLL EDAFMPIGDA QEHKNKGEYS SKNIAQVAVQ QSQIDMDYAI  300
SSNEVEATSP ACDSSFVXAM VSLENEMFLE FPELMEEPFY Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-201210222108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346824.10.0PREDICTED: transcription factor MYB39-like
TrEMBLM5WT281e-179M5WT28_PRUPE; Uncharacterized protein
STRINGPOPTR_0015s07900.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29423474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-47MYB family protein